1 |
Number of Mismatches: | 0 |
Location: | chr12:6643627-6643650 |
Genomic Sequence: | ACCGGGGGCGCGGCGGCAGGCGG |
Strand: | - |
Genomic Region: | exon(NM_002046.exon0)
|
3' PAM Orientation: | ACCGGGGGCGCGGCGGCAGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
|||||||||||||||||||||||
ACCGGGGGCGCGGCGGCAGGCGG |
Mismatch: |
| |
2 |
Number of Mismatches: | 2 |
Location: | chr17:18022467-18022490 |
Genomic Sequence: | ACCGGGCGCGCGGCCGCAGGCGG |
Strand: | - |
Genomic Region: | exon(NM_016239.exon1)
|
3' PAM Orientation: | ACCGGGCGCGCGGCCGCAGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
||||||*|||||||*||||||||
ACCGGGCGCGCGGCCGCAGGCGG |
Mismatch: |
......C................
..............C........ | Distal mismatch
Proximal seed mismatch |
3 |
Number of Mismatches: | 3 |
Location: | chr1:227058659-227058682 |
Genomic Sequence: | AGCCGGGGCCCGGCGGCAGGCGG |
Strand: | - |
Genomic Region: | gene(PSEN2)
|
3' PAM Orientation: | AGCCGGGGCCCGGCGGCAGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
|*|*|||||*|||||||||||||
AGCCGGGGCCCGGCGGCAGGCGG |
Mismatch: |
.G.....................
...C...................
.........C............. | Distal mismatch
Distal mismatch
Distal seed mismatch |
4 |
Number of Mismatches: | 3 |
Location: | chr1:2136024-2136047 |
Genomic Sequence: | TCCGGGGGCCCGGCGGCTGGCGG |
Strand: | - |
Genomic Region: | gene(C1orf86)
|
3' PAM Orientation: | TCCGGGGGCCCGGCGGCTGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
*||||||||*|||||||*|||||
TCCGGGGGCCCGGCGGCTGGCGG |
Mismatch: |
T......................
.........C.............
.................T..... | Distal mismatch
Distal seed mismatch
Proximal seed mismatch |
5 |
Number of Mismatches: | 3 |
Location: | chr22:38142288-38142311 |
Genomic Sequence: | GCCGGAGGCGCGGCGGCGGGCGG |
Strand: | + |
Genomic Region: | exon(NM_007032.exon0)
|
3' PAM Orientation: | GCCGGAGGCGCGGCGGCGGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
*||||*|||||||||||*|||||
GCCGGAGGCGCGGCGGCGGGCGG |
Mismatch: |
G......................
.....A.................
.................G..... | Distal mismatch
Distal mismatch
Proximal seed mismatch |
6 |
Number of Mismatches: | 3 |
Location: | chr7:36406644-36406667 |
Genomic Sequence: | GGCGGGGGCGCGGCGGGAGGCGG |
Strand: | + |
Genomic Region: | exon(NM_001199707.exon0)
|
3' PAM Orientation: | GGCGGGGGCGCGGCGGGAGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
**||||||||||||||*||||||
GGCGGGGGCGCGGCGGGAGGCGG |
Mismatch: |
G......................
.G.....................
................G...... | Distal mismatch
Distal mismatch
Proximal seed mismatch |
7 |
Number of Mismatches: | 3 |
Location: | chr8:130951953-130951976 |
Genomic Sequence: | AGCGGGGGAGCGGCGGCAGCCGG |
Strand: | + |
Genomic Region: | exon(NR_046359.exon0)
|
3' PAM Orientation: | AGCGGGGGAGCGGCGGCAGCCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
|*||||||*||||||||||*|||
AGCGGGGGAGCGGCGGCAGCCGG |
Mismatch: |
.G.....................
........A..............
...................C... | Distal mismatch
Distal seed mismatch
Proximal seed mismatch |
8 |
Number of Mismatches: | 3 |
Location: | chr9:94186010-94186033 |
Genomic Sequence: | TCCGGGGCCGCGGCGGGAGGCGG |
Strand: | + |
Genomic Region: | exon(NM_005384.exon0)
|
3' PAM Orientation: | TCCGGGGCCGCGGCGGGAGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
*||||||*||||||||*||||||
TCCGGGGCCGCGGCGGGAGGCGG |
Mismatch: |
T......................
.......C...............
................G...... | Distal mismatch
Distal seed mismatch
Proximal seed mismatch |
9 |
Number of Mismatches: | 3 |
Location: | chr14:97263828-97263851 |
Genomic Sequence: | GCCGGGGGCGCGGAGGCGGGCGG |
Strand: | + |
Genomic Region: | gene(VRK1)
|
3' PAM Orientation: | GCCGGGGGCGCGGAGGCGGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
*||||||||||||*|||*|||||
GCCGGGGGCGCGGAGGCGGGCGG |
Mismatch: |
G......................
.............A.........
.................G..... | Distal mismatch
Proximal seed mismatch
Proximal seed mismatch |
10 |
Number of Mismatches: | 3 |
Location: | chr16:639640-639663 |
Genomic Sequence: | GCCGGGGGCGGGGCGGCCGGCGG |
Strand: | + |
Genomic Region: | gene(RAB40C)
|
3' PAM Orientation: | GCCGGGGGCGGGGCGGCCGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
*|||||||||*||||||*|||||
GCCGGGGGCGGGGCGGCCGGCGG |
Mismatch: |
G......................
..........G............
.................C..... | Distal mismatch
Proximal seed mismatch
Proximal seed mismatch |
11 |
Number of Mismatches: | 3 |
Location: | chr6:108489648-108489671 |
Genomic Sequence: | AGCGGGGGCGCCGCCGCAGGCGG |
Strand: | - |
Genomic Region: | gene(NR2E1)
|
3' PAM Orientation: | AGCGGGGGCGCCGCCGCAGGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
|*|||||||||*||*||||||||
AGCGGGGGCGCCGCCGCAGGCGG |
Mismatch: |
.G.....................
...........C...........
..............C........ | Distal mismatch
Proximal seed mismatch
Proximal seed mismatch |
12 |
Number of Mismatches: | 3 |
Location: | chr1:225965357-225965380 |
Genomic Sequence: | ACCGGGGGCGCTGTGGCAGCCGG |
Strand: | + |
Genomic Region: | intergenic
|
3' PAM Orientation: | ACCGGGGGCGCTGTGGCAGCCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
|||||||||||*|*|||||*|||
ACCGGGGGCGCTGTGGCAGCCGG |
Mismatch: |
...........T...........
.............T.........
...................C... | Proximal seed mismatch
Proximal seed mismatch
Proximal seed mismatch |
13 |
Number of Mismatches: | 3 |
Location: | chr15:85259033-85259056 |
Genomic Sequence: | ACCGGGGGCGGGGCGGGACGCGG |
Strand: | - |
Genomic Region: | gene(SEC11A)
|
3' PAM Orientation: | ACCGGGGGCGGGGCGGGACGCGG |
Alignment: | ACCGGGGGCGCGGCGGCAGGCGG
||||||||||*|||||*|*||||
ACCGGGGGCGGGGCGGGACGCGG |
Mismatch: |
..........G............
................G......
..................C.... | Proximal seed mismatch
Proximal seed mismatch
Proximal seed mismatch |